I have a lot of sanger sequences to assemble into the contigs. To be more precise, I used 50 samples for 3 primer pairs that yielded me 300 sequences. I want to make contig for each sample of each primer pair separately. Eventually, I will end up with 150 contigs generated from forward and reverse sequences of each sample.
I know there are programs like CAP3 to generate contigs. But, is there any way to generate multiple contigs simultaneously ? In my case, 150 contigs at once ?
Looking forward for the answers!!
Thanks in advance