ProtTest and PhyML
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7.3 years ago
Michel Edwar ▴ 70

I am drawing a phylogenetic tree. To select the most appropriate model, I ran ProtTest with the aligned amino acid sequences. The ProtTest suggested that the best models for the two  LG+I+G+F. However, When I try to build the trees using PhyML, I do not know how to set the parameters to fit to the suggested models. The option -m (or --model) can accept LG. But, which options can accept G , I  and F in the suggested models?

 

PhyML ProtTest model lg • 4.1k views
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