Question: ProtTest and PhyML
0
gravatar for Michel Edwar
4.2 years ago by
Michel Edwar70
Sweden
Michel Edwar70 wrote:

I am drawing a phylogenetic tree. To select the most appropriate model, I ran ProtTest with the aligned amino acid sequences. The ProtTest suggested that the best models for the two  LG+I+G+F. However, When I try to build the trees using PhyML, I do not know how to set the parameters to fit to the suggested models. The option -m (or --model) can accept LG. But, which options can accept G , I  and F in the suggested models?

 

lg phyml prottest model • 2.6k views
ADD COMMENTlink modified 4.2 years ago by h.mon26k • written 4.2 years ago by Michel Edwar70
1
gravatar for h.mon
4.2 years ago by
h.mon26k
Brazil
h.mon26k wrote:

See How To Set The Substitution Model In Phyml? and here.

ADD COMMENTlink written 4.2 years ago by h.mon26k
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