Question: Differential Methylation Analysis
1
gravatar for enricoferrero
5.3 years ago by
enricoferrero800
United Kingdom
enricoferrero800 wrote:

Hi,

I've just started working in this area and am looking for some pointers.

What software packages does the community use for the analysis of differentially methylated regions from WGBS data?

I used Bismark to perform the alignment and the methylation calling steps.

Thanks!

wgbs methylation • 3.0k views
ADD COMMENTlink modified 3.2 years ago by hongbo91920 • written 5.3 years ago by enricoferrero800
2
gravatar for Evgeniia Golovina
5.3 years ago by
New Zealand
Evgeniia Golovina1.0k wrote:

You can also use Bsmap and methratio tools.

ADD COMMENTlink written 5.3 years ago by Evgeniia Golovina1.0k
0
gravatar for hongbo919
3.2 years ago by
hongbo91920
hongbo91920 wrote:

Hi, we have developed a new software for de novo identification of DMRs from various BS-Seq data including WGBS. Maybe it is useful for you. http://fame.edbc.org/smart/ Best wishes! :)

ADD COMMENTlink modified 2.9 years ago • written 3.2 years ago by hongbo91920
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