Abyss 1.5.2: MergePaths failed

0

Entering edit mode

8.9 years ago

yangyongzhi2008 ▴ 40

Hello everyone,

I have use the abyss software with the version of 1.5.2 to assemble the genome. But I got an error message like that:

MergePaths   -j45 -k35 -o snow-4.path2 snow-4.adj snow-4.path1
MergePaths: MergePaths.cpp:1299: ContigPath align(const ContigPath&, const ContigPath&, ContigNode, dir_type&): Assertion `count(it2+1, path2.end(), pivot) == 0' failed.
make: *** [snow-4.path2] Aborted

I found that this error has been fixed in the recent versions (1.3.4 and later), but why I got this? Please help me. Thanks.

abyss assembly • 1.5k views

ADD COMMENT • link updated 15 months ago by Ram 43k • written 8.9 years ago by yangyongzhi2008 ▴ 40

0

Entering edit mode

Sorry, not sure. Could you please post the full log of the abyss-pe run to a github gist, and link to it from here? There may be upstream information in the log that can help.

ADD REPLY • link updated 15 months ago by Ram 43k • written 8.9 years ago by benv ▴ 730

0

Entering edit mode

Please post a gist of these two files:

snow-4.adj snow-4.path1

ADD REPLY • link updated 15 months ago by Ram 43k • written 8.9 years ago by Shaun Jackman ▴ 420

Login before adding your answer.