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5.9 years ago
Tori
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90
I have GRanges object which i got from methylKit. It looks like
GRanges with 148 ranges and 2 metadata columns: seqnames ranges strand | qvalue <Rle> <IRanges> <Rle> | <numeric> [1] chr1 [ 1173916, 1174263] * | 9.62686423555631e-08 [2] chr1 [ 2121018, 2121818] * | 0 [3] chr1 [ 7887199, 7887476] * | 0 [4] chr1 [27675920, 27678016] * | 0 [5] chr1 [38461585, 38461988] * | 0 ... ... ... ... ... ... [144] chr9 [140310895, 140312457] * | 0 [145] chrX [ 12601483, 12601832] * | 0 [146] chrX [ 44169511, 44169765] * | 0 [147] chrX [153193514, 153194074] * | 0 [148] chrY [ 13370337, 13370718] * | 0 meth.diff <numeric> [1] -18.3771706593283 [2] 17.4420646973258 [3] -27.3603533740319 [4] 23.8514605550414 [5] 22.0042776419856 ... ... [144] 36.7176878762224 [145] 16.0299020341895 [146] 31.7676985330744 [147] 20.503021579582 [148] 16.6634521596941 --- seqlengths: chr1 chr10 chr11 chr12 chr13 chr14 ... chr6 chr7 chr8 chr9 chrX chrY NA NA NA NA NA NA ... NA NA NA NA NA NA
How can I annotate it with with refSeqID, gene symbol, description and entrezID?