I already have a list of snps with p values ( results from GWAS) and I also have the gene annotation for each snp. How can I do a enrichment analysis to see whether some genes pop out?
I tried GseaSnp, but it doesn't suit my case. I think GseaSnp do both the gwas and the enrichment analysis but I already have the results of GWAS and I just want to do a enrichment analysis. What kind of software can I use?
Thank you so much for your kind help!