Question: snp enrichment analysis
gravatar for anqi.liang
5.0 years ago by
United States
anqi.liang0 wrote:


I already have a list of snps with p values ( results from GWAS) and I also have the gene annotation for each snp. How can I do a enrichment analysis to see whether some genes pop out? 


I tried GseaSnp, but it doesn't suit my case. I think GseaSnp do both the gwas and the enrichment analysis but I already have the results of GWAS and I just want to do a enrichment analysis. What kind of software can I use?


Thank you so much for your kind help!

snp • 2.1k views
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