Question: snp enrichment analysis
0
gravatar for anqi.liang
5.0 years ago by
anqi.liang0
United States
anqi.liang0 wrote:

Hi,

I already have a list of snps with p values ( results from GWAS) and I also have the gene annotation for each snp. How can I do a enrichment analysis to see whether some genes pop out? 

 

I tried GseaSnp, but it doesn't suit my case. I think GseaSnp do both the gwas and the enrichment analysis but I already have the results of GWAS and I just want to do a enrichment analysis. What kind of software can I use?

 

Thank you so much for your kind help!

snp • 2.1k views
ADD COMMENTlink written 5.0 years ago by anqi.liang0
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