Question: the possibility of Lositan for big data (600K)?
0
gravatar for snowy
4.4 years ago by
snowy0
China
snowy0 wrote:

Hi,

I'm using Lositan for selection analysis and my data is whole genome-wide SNPs about 600K. Given for the limit of the large marker version, I could only calculate it for each chromosome. But I think the result mybe not reliable. 

So my quesitons are that:

1, is there a new version for big dataset?

2, what limited the number of markers, RAM or others?

3, is it possible for big data after modification?

Thank you!

 

 

lositan • 1.2k views
ADD COMMENTlink modified 4.4 years ago by RamRS24k • written 4.4 years ago by snowy0

If you're looking for Fst: https://github.com/jewmanchue/vcflib/wiki/Association-testing-with-GPAT

ADD REPLYlink written 4.4 years ago by Zev.Kronenberg11k
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