How to visualize a list of genes on their chromosomal position?
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7.5 years ago

If you go to Ensembl, I can see the location of a gene in the genome browser at various levels. One of these levels is the position on the full (schematic) chromosome. But if I have a list of genes and want to see their distribution over one or more chromosomes, is there a tool that can visualize this for me? I am happy to look up the positions myself, e.g. with the Ensembl SPARQL endpoint, and use that as input. But I still need some tool to plot these genes on nice graphical representation of chromosomes. What are my options?

genome • 6.9k views
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7.5 years ago

Egon; did you see Drawing Chromosome Ideograms With Data ?

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I guess I was not using the right search words...

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