I have a list of transcription factors from a high-throughput experiment for Cow. I would like to know about the probable target genes of these transcription factors.
What kind of experiment? RNA Seq? ChIP Seq?
Or more generally, do you currently have experimental data or are you looking to make a prediction from motifs?
I have Expression Data(Micro array). I want interaction between TF and target gene database in Bos tauruse
I'd say your best bet is to look here, and look for binding sites based on your probe sequences. http://www.bioconductor.org/help/workflows/gene-regulation-tfbs/
I have Agilent ID, then convered to Ensemble ID for Another analysis.I need to one file with Esemble ID,TF, Target gene. with this way I can get this result?