Question: How To Identify Targets of A Transcription Factor for Bos Taurus?
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gravatar for rodbari.zahra
3.9 years ago by
Netherlands
rodbari.zahra0 wrote:

I have a list of transcription factors from a high-throughput experiment for Cow. I would like to know about the probable target genes of these transcription factors.

transcription • 1.4k views
ADD COMMENTlink modified 3.9 years ago by andrew.j.skelton735.7k • written 3.9 years ago by rodbari.zahra0

What kind of experiment? RNA Seq? ChIP Seq?

ADD REPLYlink written 3.9 years ago by andrew.j.skelton735.7k

Or more generally, do you currently have experimental data or are you looking to make a prediction from motifs?

ADD REPLYlink written 3.9 years ago by Jautis270

I have Expression Data(Micro array). I want interaction between TF and target gene database in Bos tauruse

ADD REPLYlink written 3.9 years ago by rodbari.zahra0
0
gravatar for andrew.j.skelton73
3.9 years ago by
London
andrew.j.skelton735.7k wrote:

I'd say your best bet is to look here, and look for binding sites based on your probe sequences. http://www.bioconductor.org/help/workflows/gene-regulation-tfbs/

 

ADD COMMENTlink written 3.9 years ago by andrew.j.skelton735.7k

I have Agilent ID, then convered to Ensemble ID for Another analysis.I need to one file with Esemble ID,TF, Target gene. with this way I can get this result?

 

ADD REPLYlink written 3.9 years ago by rodbari.zahra0
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