Question: Tool to classify RNA types from your RNA-seq experiment
2
gravatar for rna-seq_researcher
2.5 years ago by
Netherlands
rna-seq_researcher40 wrote:

Hi all, I'm looking for a tool I can use to categorize the RNA's from my seq experiment similarly to what is shown below. I saw somewhere that Picard tools may do the trick, but I couldn't find this functionality after a quick look. 

Any suggestion would be greatly appreaciated :)

 

rna-seq rna • 1.4k views
ADD COMMENTlink modified 2.5 years ago by andrew.j.skelton734.1k • written 2.5 years ago by rna-seq_researcher40
1
gravatar for andrew.j.skelton73
2.5 years ago by
Newcastle Upon Tyne
andrew.j.skelton734.1k wrote:

The GTF file for your given annotation may have this information. You could also use biomaRt to take the gene (or transcript) IDs and find their biotype, then it's a simple case of counting numbers for each category. 

 

ADD COMMENTlink written 2.5 years ago by andrew.j.skelton734.1k
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