Tool to classify RNA types from your RNA-seq experiment
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8.3 years ago

Hi all, I'm looking for a tool I can use to categorize the RNA's from my seq experiment similarly to what is shown below. I saw somewhere that Picard tools may do the trick, but I couldn't find this functionality after a quick look.

Any suggestion would be greatly appreaciated :)

RNA-Seq rna • 2.7k views
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Entering edit mode
8.3 years ago

The GTF file for your given annotation may have this information. You could also use biomaRt to take the gene (or transcript) IDs and find their biotype, then it's a simple case of counting numbers for each category.

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