Question: How to visualize WGS tuberculosis VCF files, BAMs and mutation reports from NextGene software?
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gravatar for vassialk
3.8 years ago by
vassialk190
Belarus
vassialk190 wrote:

How to visualize VCF files and, BAMs and mutation reports from nextGene software? Need somehow to visualize what tuberculosis genomic regions are mostly affected by mutations. What software and functions to use? How to find genome regions with significant mutations and vice versa: stable areas?

 

Thanks

sequencing wg • 1.2k views
ADD COMMENTlink written 3.8 years ago by vassialk190

You can visualize VCF and BAM with IGV

"How to find significant mutations" - this is different question and you won't be able to do this simply by visualizing your VCFs.

ADD REPLYlink modified 3.8 years ago • written 3.8 years ago by PoGibas4.8k
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