Question: Impute2 race specific panel?
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gravatar for Zhenyu Zhang
3.8 years ago by
Zhenyu Zhang240
United States
Zhenyu Zhang240 wrote:

I am planing to impute about 3000 samples using impute2.  These have been filtered by smartpca to be European descendant.  Should I use 1000G samples as reference panel, or should I filter the 1000G data to only use CEU and TSI? (or are there such panel for download directly)? 

 

Another question.  Given the size of my sample, should I do 1 step imputation, or 2 step?  Thanks.

ceu snp imputation impute2 • 1.1k views
ADD COMMENTlink written 3.8 years ago by Zhenyu Zhang240
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