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Recent Replies
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by
Mensur Dlakic
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Everything that @f1f58aed said, plus that there may be no data manipulation that will give you the clusters you expected. Sometimes there a…
Answer: Creating Synthetic Sequences for a ML Model
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It is a good idea, though I don't see how it would work in practice.
I think you will encounter at least additional problem on top of da…
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Right now, the WT samples are clustering together, but you have one mutant sample off by itself, which could be an outlier. How did you sc…
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@yokofakun had written this: https://www.biostars.org/p/336965/
https://github.com/ruqianl/appendCB may also be useful.
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Please post information about your tool as a `tools` category post. Don't wait/ask other users to ask you.
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Sorry for the delay in my answer, I got sidetracked.
I am using
```samtools addreplacerg -r "@RG\tID:$cell" -o $cell.bam -h $LINE```
bu…
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We just developed a R package to tackle this problem.
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Cross posted here (including the code used to make up the counts):
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He is already giving 32G, 320G for marking duplicates for exome is excessive. Is there a specific reason for using the tool?
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This looks good. Please try with using `--allow-no-sex flag`
plink --bfile your_data_phenoUP --assoc --allow-no-sex --out your_data_ph…
Comment: How to convert plink files to Hapmap Format
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SC899359_PC75420_A05 SC899359_PC75420_A05 0 0 0 2
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Please show me a few lines of phenotype updated .fam file. You can do `head
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