I have install shrimp 2 in my Linux system by command line that is given in read me file,
following command are
$ tar xvzf SHRiMP_2_2_3.lx26.x86_64.tar.gz $ cd SHRiMP_2_2_3 $ file bin/gmapper bin/gmapper: ELF 64-bit LSB executable, AMD x86-64, version 1 (SYSV), for GNU/Linux 2.6.9, statically linked, for GNU/Linux 2.6.9, not stripped $ export SHRIMP_FOLDER=$PWD than I start mapping genome with reference using following command $SHRIMP_2_2_3/bin/gmapper-cs DRR0000_2.fasta \ ciona.fa \ -N 4 -o 5 -h 80% >map.test1.out 2>map.test2.log
I got empty .out file and map.test2.log file getting following error
bash: /bin/gmapper-cs: No such file or directory
As I am a beginner and recently used this software kindly provide me some guidance which can help me solve this problem.