How to reuse DESeq2 inputs for EdgeR
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7.6 years ago
SmallChess ▴ 600

Let's say I have an input for DESeq2 ready, such as:

library("airway")

data("airway")
se <- airway

se is an instance of class SummerizedExperiment. The object can be given to DESeq2 directly for analysis. But how do I use it for EdgeR? The user manual of EdgeR assumes a input matrix to construct DGEList. But how do I do it from an instance of SummerizedExperiment?

deseq2 edgeR • 1.5k views
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Entering edit mode
7.6 years ago
Phil S. ▴ 700

Have you tried it that way?

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