Convert BED(UCSC) to VCF
I am using liftOver to convert hg19-hg38. I made BED file from VCF to run liftOver. How can I convert output BED(HG38) to VCF format.
Instead of doing multiple conversions, you can use CrossMap to convert VCF (hg19) <-> VCF (hg38). Other than VCF, it can support SAM/BAM, Wiggle/BigWig, BED, GFF/GTF file formats.
Or you can use NCBI remap.
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