Entering edit mode
9.3 years ago
emertekin
•
0
Hello,
I am trying to annotate fasta protein sequences in the Pfam database. I only want to get the best hit for each of my sequences. How can I do this with hmmsearch or phmmer?
Thank you
Is there a specific reason why you don't want to use the pfamscan.pl script provided on the pfam site? As far as I remember, it returns the best hit with default settings and it generally works quite well.