Question: assembly of large Genome(tool)
0
gravatar for midox
3.8 years ago by
midox220
Tunisia
midox220 wrote:

hello,
I wanted to know what is the most appropriate tool assembler for data from a large "large genome" as the plant genome? according to your experiences.
thank you

ngs large génome assembly • 937 views
ADD COMMENTlink modified 3.8 years ago by Moss20 • written 3.8 years ago by midox220

what kind of library do you have ? do you have PacBio reads or not? based on what you have there will be  different stratify 

 

ADD REPLYlink written 3.8 years ago by Medhat8.2k

yes I have PacBio Reads .
and I want to find an assembler which is adaptable to wide assembled Genome

ADD REPLYlink modified 3.8 years ago • written 3.8 years ago by midox220

you have PacBio with illumina to correct or only PacBio

ADD REPLYlink written 3.8 years ago by Medhat8.2k

yes, i have PACBIO with Illumina.

ADD REPLYlink written 3.8 years ago by midox220
2
gravatar for Moss
3.8 years ago by
Moss20
Cleveland, OH
Moss20 wrote:

The best assembler I've been exposed to is the the one developed by NRGene on maize. They specialize in the complex plant genomes while most other assemblers were developed to be used on human or animal systems. Here's one of the press releases on their work in maize:

http://www.bigdatanews.com/group/bdn-daily-press-releases/forum/topics/big-data-genomic-analysis-delivers-complete-corn-genome-in-34-hou

Good luck to you!

ADD COMMENTlink written 3.8 years ago by Moss20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 709 users visited in the last hour