Question: DANPOS2 with ATAC Seq data?
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gravatar for Sciurus
2.5 years ago by
Sciurus0
Vancouver
Sciurus0 wrote:

Hi smart folks out there :-)

I was wondering about the analysis of ATAC Seq data and specifically about the step using DANPOS2. It has been developed to analyse MNAse Seq data, right?

But contrary to MNase Seq ATAC Seq data gives me reads where there are NO nucleosomes. Wouldn't this mean that I need to somehow inverse my data to be able to analyze them with DANPOS?

And also for binning the peaks regarding length - wouldn't it only make sense if I binned the area that is NOT covered by reads? 

Any help, tips, experience would be great and much appreciated!
Thanks! 

danpos2 atac seq danpos atac • 1.1k views
ADD COMMENTlink modified 2.4 years ago by Biostar ♦♦ 20 • written 2.5 years ago by Sciurus0
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