Question: How can we get names of reads per contig with IDBA-ud?
0
gravatar for j-blanchard
5.3 years ago by
j-blanchard10
France
j-blanchard10 wrote:

Hi everyone, 
I am using IDBA-ud to assembly reads from an exome sequencing. I would like to access to the name of each read which compose a contig. Is there an option or a way to have these informations?

Thank you very much.

 

 

 

name of reads idba-ud • 1.4k views
ADD COMMENTlink modified 4.7 years ago by Biostar ♦♦ 20 • written 5.3 years ago by j-blanchard10
0
gravatar for 5heikki
5.3 years ago by
5heikki9.0k
Finland
5heikki9.0k wrote:

You can map your reads to the contigs with e.g. bwa.

ADD COMMENTlink written 5.3 years ago by 5heikki9.0k

Of course but it would be faster if IDBA-ud give it directly. But if it doesn't I will have to do something like that, yes.

ADD REPLYlink written 5.3 years ago by j-blanchard10
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