How can we get names of reads per contig with IDBA-ud?
1
0
Entering edit mode
7.0 years ago
j-blanchard ▴ 10

Hi everyone, 
I am using IDBA-ud to assembly reads from an exome sequencing. I would like to access to the name of each read which compose a contig. Is there an option or a way to have these informations?

Thank you very much.

 

 

 

IDBA-ud name of reads • 1.7k views
ADD COMMENT
0
Entering edit mode
7.0 years ago
5heikki 10k

You can map your reads to the contigs with e.g. bwa.

ADD COMMENT
0
Entering edit mode

Of course but it would be faster if IDBA-ud give it directly. But if it doesn't I will have to do something like that, yes.

ADD REPLY

Login before adding your answer.

Traffic: 1307 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6