Question: genome browser with genomic coordinate
0
gravatar for sacha
3.5 years ago by
sacha1.6k
France
sacha1.6k wrote:

This is a simple question.. But I didn't success it !

I m trying to use free genom viewer like Ensembl or ncbi.  I try to check the mutation 35delG in GJB2 gene.

From ensembl or ncbi, I don't know how to display the sequence at genomic coordinate ( c.35 ) .. Could you help me ?
 

ADD COMMENTlink modified 3.5 years ago by igor7.1k • written 3.5 years ago by sacha1.6k
2
gravatar for Raony Guimarães
3.5 years ago by
Dublin / Ireland
Raony Guimarães860 wrote:

Using clinvar you can see this variant at this link http://www.ncbi.nlm.nih.gov/clinvar/variation/17004/

From this page you can visualize your variant on NCBI 1000 Genomes Browser: http://www.ncbi.nlm.nih.gov/variation/tools/1000genomes/?chr=13&from=20763686&to=20763686>s=rs80338939&mk=20763686:20763686|rs80338939

ADD COMMENTlink written 3.5 years ago by Raony Guimarães860
0
gravatar for igor
3.5 years ago by
igor7.1k
United States
igor7.1k wrote:

You can use Mapback tool to go between amino acid, CDS, and genomic coordinates:

 

ADD COMMENTlink modified 3.5 years ago • written 3.5 years ago by igor7.1k
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