The download speed to my AWS server hosted in Frankfurt (I live in Germany) is 50Mb/s.
My upload speed however is only 5Mb/s.
Therefore, to upload 1Tb of data to AWS would take roughly 444.4 hours, or 18 and a half days assuming i get the full rate with no dropouts.
Of course you wouldn't have to transfer ALL the data before initialising some kind of analysis, but fact of the matter is that transfer time to cloud services is huge - and its only going to get worse. Illumina can half its prices a lot quicker than even the most efficient governments can dig up all the road from here to Frankfurt and lay twice the fibre.
I think it would be much more efficient to take the sequencing machine to Google. But then you'd need the biological samples and the wetlab scientists there too. And I guess having the Bioinformaticians in proximity would be nice too. Thats a pretty broad range of people, so I guess you could call this new facility 'The Broad Institute of Google', or something.
"OK glass - sequence genome." -shudder-
modified 5.6 years ago
5.6 years ago by
John ♦ 12k