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• How miRNA sequencing works by Illumina GA ?
  Hi all, I'm using TCGA data set to analysis the expression of miRNA in cancers. They used Illumi...
• Does mirna-seq is stranded?
  I'm using miRNA-seq data retrieved from the TCGA project. When looking on the aligned sequences ...
• Which kind of microRNAs expression are measured in TCGA?
  Hi all, I have download the mRNA and microRNA NGS data from TCGA for BRCA. for downloading the m...
• How to acquire the mature miRNA data from TCGA
  Hello! I have some questions about the data from TCGA(experimental.strategy = "miRNA-Seq"), ther...
• I Want To Get Mirna- Mrna Expression From One Sample In One Experiment From Tcga, But It'S Seems That, The Experiment Centers Are Diffrent.Any Help?
  Hi all, I want to get the miRNA-mRNA expression which measured in one sample from TCGA,(paired s...
• How to get count matrix from aligned file
  Hi everyone! I'm working with microRNAs and I mapped my reads (from mirnaSeq) using the referenc...
• TCGA and miRNA
  How do I get miRNA expressions from TCGA breast samples? I would like to see what the differing ...
• Map Smallrna-Seq On Mirna
  Hi, I've smallRNA-seq data and want to count the number of read for each miRNA. I'm studying sam...
• Anyone Worked With Pygr Could Help Me Determine If It'S The Correct Tool For My Tasks
  Hi all, I would like to evaluate pygr for annotation mapping work that I have been doing but afte...
• miRNAs detected in bulk mRNA-Seq data - how to annotate?
  Hello, In our bulk mRNA-Seq data, about ~600 of our ~21,000 detected genes were miRNAs. All of t...
• RNA-editing pipeline for miRNAs
  Hi, This is my very first post and I'm also a newbie in performing bioinformatic analysis, so fo...
• Aligning miRNA sequences
  Hello. I've been recently dealing with miRNA sequences and aligning them has been somewhat proble...
• novel miRNA identification from sequence
  Hi everyone! I'm looking for a tool that can allow me to predict novel miRNA from their sequence...
• Unique human miRNAs
  Hi,  I want to have a list of miRNAs unique for humans, e.i. those expressed in humans but not i...
• How To Get Mirna-Mrna Expression In Same Sample From Tcga ?
  Hi all, I want to get miRNA-mRNA expression measured in same sample from TCGA. for example I've ...
• How to deal with sequencing reads that can both align to miRNA precursors and mRNA database?
  Hi, I have some miRNA sequencing datasets from human, the 3' adapters were trimmed and reads len...
• miRNA binding detection from RNA-seq reads
  Hello, I have a question regarding miRNA binding to mRNA. If a mRNA binds with miRNA, it will fo...
• Peak calling for microRNA
  Hi everyone! I'm working with microRNA, I have miRNA-Seq from different tissue and I want to per...
• Different TCGA file IDs with same the Sample ID
  Hi everyone, I have recently downloaded miRNA sequencing data of LUAD project from TCGA. Howeve...
• Help On Getting Data From Tcga
  Hi all, I'm trying to get data for mRNA-miRNA expression RNA-seq data (both measured in one samp...
• How To Retrieve Tcga Mirna-Mrna Data
  I will be very thankful if someone could help me. I want to retrieve miRNA-mRNA data from TCGA, d...
• Matching 3'Utr Mutations To Mirna Target Sites
  Hi, I have been provided with a file of 3'UTRs that are mutated from the core facility. I'm tryi...
• Using Flexarry software to analyze expression of miRNA-seq data
  Dear all, I'm wondering if anybody has an experience to use flexarry software to find differenti...