Question: How To Interpret Multiple Alignment Score In Clustalw?
1
gravatar for Muzna
3.7 years ago by
Muzna10
Muzna10 wrote:

When we use CLUSTALW for multiple alignment of aa, then on result page first appear pairwise alignment score which is in percentages, then appear multiple alignment score. I am unable to understand that one multiple alignment score. Can anyone please explain it to me how to read it or interpret it?

ADD COMMENTlink modified 3.7 years ago by Rm7.0k • written 3.7 years ago by Muzna10
7
gravatar for Rm
3.7 years ago by
Rm7.0k
Danville, PA
Rm7.0k wrote:

follow these links: http://www.ebi.ac.uk/Tools/msa/clustalw2/help/faq.html#21

http://people.scs.carleton.ca/~dehne/publications/2-68.pdf (page 304-305)

ADD COMMENTlink written 3.7 years ago by Rm7.0k

I agree with this answer. The sum-of-pairs score is well explain page 304 of the paper.

ADD REPLYlink written 3.7 years ago by Bilouweb1000
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