Question: How To Interpret Multiple Alignment Score In Clustalw?
1
gravatar for Muzna
2.4 years ago by
Muzna10
Muzna10 wrote:

When we use CLUSTALW for multiple alignment of aa, then on result page first appear pairwise alignment score which is in percentages, then appear multiple alignment score. I am unable to understand that one multiple alignment score. Can anyone please explain it to me how to read it or interpret it?

ADD COMMENTlink modified 2.4 years ago by Rm6.5k • written 2.4 years ago by Muzna10
5
gravatar for Rm
2.4 years ago by
Rm6.5k
US
Rm6.5k wrote:

follow these links: http://www.ebi.ac.uk/Tools/msa/clustalw2/help/faq.html#21

http://people.scs.carleton.ca/~dehne/publications/2-68.pdf (page 304-305)

ADD COMMENTlink written 2.4 years ago by Rm6.5k

I agree with this answer. The sum-of-pairs score is well explain page 304 of the paper.

ADD REPLYlink written 2.4 years ago by Bilouweb960
Please log in to add an answer.

Help
Access
  • RSS
  • Stats
  • API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.0.0
Traffic: 635 users visited in the last hour