Tool: CNVkit, robust genome-wide copy number detection from DNA sequencing
4
Eric T. • 2.6k wrote:
CNVkit is a flexible command-line toolkit and Python library for calling, visualizing and analyzing copy number variants or alterations from DNA sequencing reads.
It performs especially well for hybrid capture sequencing protocols with whole-exome or custom target panels, but can also be used on whole-genome sequencing, and there is preliminary support for targeted amplicon capture and direct analysis of SNP allele frequencies.
Source code: https://github.com/etal/cnvkit
Documentation: https://cnvkit.readthedocs.org
Poster: http://f1000.com/posters/browse/summary/1096236
Paper (preprint): http://dx.doi.org/10.1101/010876
ADD COMMENT
• link
•
modified 6 months ago
by
tanbiswas6 • 0
•
written
5.4 years ago by
Eric T. • 2.6k