Tool: CNVkit, robust genome-wide copy number detection from DNA sequencing
gravatar for Eric T.
5.7 years ago by
Eric T.2.6k
San Francisco, CA
Eric T.2.6k wrote:

CNVkit is a flexible command-line toolkit and Python library for calling, visualizing and analyzing copy number variants or alterations from DNA sequencing reads.

It performs especially well for hybrid capture sequencing protocols with whole-exome or custom target panels, but can also be used on whole-genome sequencing, and there is preliminary support for targeted amplicon capture and direct analysis of SNP allele frequencies.

Source code:
Paper (preprint):

cnvkit cnv tool python sv • 2.3k views
ADD COMMENTlink modified 9 months ago by tanbiswas60 • written 5.7 years ago by Eric T.2.6k
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