Question: is it rational to compare/align our local WGS tub sequences with all available tuberculosis WGS strains?
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gravatar for vassialk
3.8 years ago by
vassialk190
Belarus
vassialk190 wrote:

is it rational to compare/align our local WGS tub sequences with all available tuberculosis WGS strains?

I have aligned all our 165 samples with the Cole`s 1998 WGS tuberculosis strain. All SNPs are found OK.  Now I want to choose the other reference files. I could find 29 of them. Are there more and are they all suitable for comparing our local samples?

 

And should I align against a set of references or group them somehow in NextGene software?

 

 

Thx

sequencing wg • 1.1k views
ADD COMMENTlink modified 3.8 years ago • written 3.8 years ago by vassialk190
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