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12.4 years ago
Bioscientist
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1.7k
Usually we see fastq format like:
@HWI-ST150_0129:3:1:6030:54572#0/2
GTGAGTACAAGAGATAATTTCAGAGGTATTTGGAATATAGATTTTTAAAAGTAGTTTTGAAGACTTTTTTAAAACAGCATTTAAAAGGTTTTTGGTGCCAA
+HWI-ST150_0129:3:1:6030:54572#0/2
b`bbb`ccc`bYbb`ffeefc^dcccYbcccaa`bddddeffccfdddcd```bbcddddeec^ecffc^dddcddZdcc^^ddac`T_bTW\V`\b```d
However recently I came across very weird lines like:
dd\ecce^eee`eddaaecfedfccdadfeedfe`eac\]a_Z\\`cada\dT]U_bbYd^dadYad`d^`d^^_cTaYbYb^dd\dTUTQVI\\\\SUUaBBBWI-ST150_0129:3:1:5776698:942532
dd\GTCACTGAGTTTCAGCAACAATCTCTGTTTTCTTTGGAATTACCGCCACTAGACCTGAATTACCATCTTCAGGCCTAGCAGTGGTAATTCCTTCCCATATTWI-ST150_0129:3:1:6286698:942532
dd\ffffffffefefff^fcfffefafffffffdfdd`^efcffeefefefffffaffeeeeYdddc`addcdcdcde`YYb^``b^GVVWZY_TY`^POYXO^WI-ST150_0129:3:1:57767238942522
dd\CACGGGTAACCTCTAAACACACATATGCTAGTAAGAGCAAAGTAACACAGACAGCAAAGACTGGAAAAAATAACGAATCCTTCAATGCGAAGACATAGTTGWI-ST150_0129:3:1:62867238942522
Can anyone give a hint what's this? Some special format for Illumina 1.5+? thx
edit: I actually transfer this file from other server using "scp". Original file is pretty good; while the one after being transferred is crappy! This is so weird! This is really