Tutorial:Determine if a transcription factor is bound with CENTIPEDE
I wrote a practical tutorial for how to use CENTIPEDE to determine if a transcription factor is bound to a site in the genome.
The tutorial provides step-by-step instructions for:
- Preparing the appropriate input data.
- Running the analysis.
Thank you for producing this great tutorial.
I have a question. When I try to use the
centipede_data function of the R package that you have provided, I always end up getting this error:
Error in sprintf("%.bai", bam_file) :
invalid format '%.ba'; use format %s for character objects
Do you have any suggestion to solve this issue?
Thanks a lot.
Thank you again for producing this fantastic tutorial.
When I use
devtools::install_github("slowkow/CENTIPEDE.tutorial") to install the tutorial, I got this error:
Downloading GitHub repo slowkow/CENTIPEDE.tutorial@master
Error in curl::curl_fetch_memory(url, handle = handle) :
couldn't resolve host name
Could you please help me with this problem? I searched it in many websites but still no answer.
Thank you. And early to wish you Merry Christmas and Happy New Year~
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