Entering edit mode
8.7 years ago
bioguy24
▴
230
I added bedops-2.14.2 to path using:
export PATH=$PATH:"/media/C2F8EFBFF8EFAFB9/bedops-2.14.2"
and am trying to run:
dnascopev@ubuntu:/media/C2F8EFBFF8EFAFB9$ gunzip --stdout gencode.v21.annotation.gtf.gz \
> | gtf2bed - \
> | grep "exon" \
> > gencode.exons.bed
bash: /media/C2F8EFBFF8EFAFB9/bedops-2.14.2/bin/gtf2bed: Permission denied
I can not figure out why I am getting the error? Thank you :).