I'm getting the following error with FastUniq (running for PE sequences, testing with just one pair):
Error in open left fastq file *FULL TEXT OF FIRST READ IN FIRST FILE* for read!
There are a few other complaints of this problem scattered on the web but none have even a suggestion for solving it. Does anyone have any ideas for how to resolve this issue? Or, alternatively, want to suggest another tool for filtering duplicates in fastq format?