Question: how to work with sff file generate from roche_454
0
gravatar for debashis.bioinfo
3.3 years ago by
india
debashis.bioinfo0 wrote:

Hello all,

I want to do the genome assembly. Now I have the sff file generated from roche-454. First, I want to do the quality filteration process and after that I want do the assembly. Please let me know which software will be the best one for low quality base trimming and assembly of the reads.

Thanking You,

With Regards,

Debashis 

genome • 886 views
ADD COMMENTlink modified 3.3 years ago by rtliu2.0k • written 3.3 years ago by debashis.bioinfo0
1
gravatar for rtliu
3.3 years ago by
rtliu2.0k
New Zealand
rtliu2.0k wrote:

Some sff background information - here

Newbler is the best software for 454 data.  You may request one from here

 

ADD COMMENTlink modified 3.3 years ago • written 3.3 years ago by rtliu2.0k
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