help about HaploMerger

Question

[Mehmet]

Dear All,

I have to remove some repeats from my assembly. For this, I used RepeatModeler and RepeatMasker. After that, I need to use HaploMerger, but I have received errors in the first step of Haplomerger. I used hm.batchA.initiation_and_all_lastz script, but I could not get any output file. I read the manual of HaploMerge, followed each steps, but I have not been able to handle this error.

Thank you.