I just downloaded some SRA datasets. I got the Text file which has sample number, GEO accession (starting with GSM) and the fastq files are labelled SRR----. I donot know how I know which fastq file belong to which sample. Moreover when i look up the Geo accession- it shows the SRR under run. And there are two run IDs for one GSM. Does that mean I have to combine them? If yes- whats the best way to do this?
Thanks so much!!