Kegg provides a function called enzymesbycompound yet I am unaware how to filter the results by the enzymes actually present within a given organism (in my case: Arapidopsis th.)
Aracyc provides exactly that, yet I haven't found any APIs for it?
The worst case scenario would be, to run another function that looks up the presence of each enzyme for the given organism.
The idea is to reconstruct or retrieve the metabolic network up to a certain number of edges, starting from one metabolite or enzyme
Any pointers, suggestions?
I think a fast way would be to retrieve all enzymes present in a given organism (Array1) and then just intersect it against the Array2 holding all enzymes for a given compound. Any pointers on getting an enzyme list for a given organism?