Question: Co-ordinates of folds in protein domains
0
neerajamurugan • 0 wrote:
From where can I get information for finding co-ordinates of protein folds present in protein domains
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search your domain in PFAM, under the structures tab you will find the PDB structures containing your domain of interest.
For example, my domain of interest is PF00056. From PFAM, I know that there is Rossman fold associated with this domain. ( Link ). Under the structures tab i'm choosing PDB 1Y6J. If I m downloading the pdb file for this, I get the co-ordinates only for HELIX and SHEETS, not for the entire fold. (Or) Under the structures tab there is a table with column head UniProt residues. Should I take that as co-ordinates of the fold ?