Question: Co-ordinates of folds in protein domains
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gravatar for neerajamurugan
5.0 years ago by
neerajamurugan0 wrote:

From where can I get information for finding co-ordinates of protein folds present in protein domains

folds protein • 1.1k views
ADD COMMENTlink modified 5.0 years ago • written 5.0 years ago by neerajamurugan0

search your domain in PFAM, under the structures tab you will find the PDB structures containing your domain of interest.

ADD REPLYlink written 5.0 years ago by venu6.6k

For example, my domain of interest is PF00056. From PFAM, I know that there is Rossman fold associated with this domain. ( Link ). Under the structures tab   i'm choosing PDB 1Y6J. If I m downloading the pdb file for this, I get the co-ordinates only for HELIX and SHEETS, not for the entire fold. (Or) Under the structures tab there is a table with column head UniProt residues. Should I take that as co-ordinates of the fold ?

ADD REPLYlink written 5.0 years ago by neerajamurugan0
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