Question: Help using shortBRED
0
gravatar for camachofrancine
3.8 years ago by
United States
camachofrancine90 wrote:

Hi there, 

I am using shortBRED and while using the ./shortbred_identify.py program I get the following error : 

Making a fasta file for each protein family...
Traceback (most recent call last):
  File "./shortbred_identify.py", line 269, in <module>
    pb.MakeFamilyFastaFiles( strMapFile, str(args.sGOIProts), dirFams)
  File "/Users/fc/Desktop/shortBRED/src/process_blast.py", line 262, in MakeFamilyFastaFiles
    f = open(strFamFile, 'w')
IOError: [Errno 2] No such file or directory: 'mergedDB_identify/clust/fams/gi_92012075_|ctg1_orf00009|transatpks|short-chain_dehydrogenase/reductase_SDR.faa'

Does anybody have any thoughts about this error? 

Thanks in advance!

software error • 845 views
ADD COMMENTlink modified 3.8 years ago • written 3.8 years ago by camachofrancine90
0
gravatar for camachofrancine
3.8 years ago by
United States
camachofrancine90 wrote:

Seems like shortBRED doesn't like it when you make your own fasta headers. The issue was I had "|" within my header and this created the error. 

ADD COMMENTlink modified 3.8 years ago • written 3.8 years ago by camachofrancine90
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