Question: software advise: visualise the phylogenetic tree that uses bubbles on the branches to indicate abundance.
0
gravatar for cara78
3.1 years ago by
cara7810
EU
cara7810 wrote:

I have a phyloxml(.xml) which was made after pplacer analysis. I need to visualise the phylogenetic tree with software that uses bubbles on the branches to indicate abundance.

Would anyone know any software that will take the xml file and uses bubbles on the branches to indicate abundance?

 

ADD COMMENTlink modified 3.1 years ago by jhc2.7k • written 3.1 years ago by cara7810
3
gravatar for jhc
3.1 years ago by
jhc2.7k
Germany
jhc2.7k wrote:

Take a look at ETE, it will require some basic scripting, but have plenty of options to draw annotated trees (http://pythonhosted.org/ete2/tutorial/tutorial_drawing.html)It also has basic PhyloXML support. 

ADD COMMENTlink written 3.1 years ago by jhc2.7k
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