Question: Seq Qc/Trimming Code Preferences?
2
gravatar for Holly
7.8 years ago by
Holly30
United States
Holly30 wrote:

Does anyone have any preferences that they might like to share regarding QC/Trimming tools for RNAseq? I have been testing FASTX, FASTQC and Prinseq. I like Prinseq the best so far, and also know there is alot available on bioconductor. I need sometihing that will feed into Bowtie/Tophat. Opinions? thanks, holly

qc trimming next-gen rna • 1.3k views
ADD COMMENTlink modified 7.7 years ago by Chris Penkett480 • written 7.8 years ago by Holly30

http://biostar.stackexchange.com/questions/1924/trimming-algorithm

ADD REPLYlink written 7.8 years ago by Jeremy Leipzig18k
1
gravatar for Chris Penkett
7.8 years ago by
Chris Penkett480
Cambridge, UK
Chris Penkett480 wrote:

RNA-SeQC is a new Broad tool to do visual QC for RNA-seq data.

ADD COMMENTlink written 7.8 years ago by Chris Penkett480
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