SNP in an area with high rate of recombination
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7.0 years ago

Dear all, 

We have performed a GWAS study. We have found a SNP with genome  wide significance p-value. We also replicated this result in a separate dataset.However, this SNP is not in high LD with nearby SNPs ( i.e a region with high rate of recombination rate.) I was wondering what the interpretation of this SNP would be in the presence of high recombination rate. 

thanks

GWAS recombination linkage • 1.9k views
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