after haplotype phasing with beagle v4, now i have vcf (phased file data) file. but i don't know how to convert it to haploview file format with keep phasing while converting.
previous version of beagle software (v3.2) for haplotype inferring was good for both understanding and work with it specially after phasing haplotypes, one could easily convert it to other formats. but unfortunately the latest version is very hard to use and understand.
thx for your answres