converting vcf to haploview with keep phasing

Tutorial:converting vcf to haploview with keep phasing

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5.7 years ago

Mohammad Ghoreishi ▴ 50

dear all

after haplotype phasing with beagle v4, now i have vcf (phased file data) file. but i don't know how to convert it to haploview file format with keep phasing while converting.

previous version of beagle software (v3.2) for haplotype inferring was good for both understanding and work with it specially after phasing haplotypes, one could easily convert it to other formats. but unfortunately the latest version is very hard to use and understand.

thx for your answres

genome software error Tutorial • 3.2k views

ADD COMMENT • link 5.7 years ago by Mohammad Ghoreishi ▴ 50

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az rah oomade soale sakht sakht miporsi?!!

ADD REPLY • link 5.7 years ago by A ★ 3.9k

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fek nemikonam shoma ba haplotype inferring kar dashte bashin, akhe version e gablie beagle kheili rahat bud va documantation 33 safheyi dasht. hadaghal mishod ye chizi fahmid ama tu version e jadid ke documentesh fagat 7 safhast va hich tozihi nadade.

ADD REPLY • link 5.7 years ago by Mohammad Ghoreishi ▴ 50

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darket mikonam ama momaresat hamishe javab mide...rasti hal kardi hads zadam ham zabunim?!

ADD REPLY • link 5.7 years ago by A ★ 3.9k

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omidvaram momaresatam javab bede. hanuz data ham dastam nareside amma daram ba datahaye digaran inkararo anjam midam. va chan ruze ke fagat allafe phasing hastam.

taajob kardam didam kesi be farsi neveshte. berlin zendeghi mikonid? chi mikhunid?!

ADD REPLY • link 5.7 years ago by Mohammad Ghoreishi ▴ 50

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aalie ke qable amade shodane dadehat shoru kardi...genetics moleculi mikhunam...to ham bia Berlin khosh migzare!

ADD REPLY • link 5.7 years ago by A ★ 3.9k

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che jaleb genetic e moleculi. ettefaghan tasmim daram vase doctora beram amrica ya australi, vali zaban e almani yad gereftan kheili sakhte.

please add goreishi@gmail.com to get more familiar with together.

ADD REPLY • link 5.7 years ago by Mohammad Ghoreishi ▴ 50

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barat ba gmail ye email ferestadam!

ADD REPLY • link 5.7 years ago by A ★ 3.9k

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pas hal kardi ke like kardi?!

ADD REPLY • link 5.7 years ago by A ★ 3.9k

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are aval taajob kardam amma khoshhal shodam didam kesi payam e farsi gozashte.

ADD REPLY • link 5.7 years ago by Mohammad Ghoreishi ▴ 50

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Please write in ENGLISH!!

ADD REPLY • link 5.7 years ago by Tafelplankje ▴ 120

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I a sorry Dear Tafelplankje. this was just a conversation between Sarah and I, and not related to my questions.

ADD REPLY • link 5.7 years ago by Mohammad Ghoreishi ▴ 50

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So, please, if you do not care about it do it in another place e.g. private e-mails. We can then keep the goal from this environment that is share knowledge one each other in english! Your topic was quite interesting, however with an upsetting progress. Thanks a lot! Best, Juliana.