Tutorial: converting vcf to haploview with keep phasing
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gravatar for Mohammad Ghoreishi
2.3 years ago by
Iran/Karaj/Tehran University
Mohammad Ghoreishi50 wrote:

dear all

after haplotype phasing with beagle v4, now i have vcf (phased file data) file. but i don't know how to convert it to haploview file format with keep phasing while converting.

previous version of beagle software (v3.2) for haplotype inferring was good for both understanding and work with it specially after phasing haplotypes, one could easily convert it to other formats. but unfortunately the latest version is very hard to use and understand.

 

thx for your answres

tutorial software error genome • 1.3k views
ADD COMMENTlink written 2.3 years ago by Mohammad Ghoreishi50
1

az rah oomade soale sakht sakht miporsi?!!

ADD REPLYlink written 2.3 years ago by Fereshteh2.8k
1

fek nemikonam shoma ba haplotype inferring kar dashte bashin, akhe version e gablie beagle kheili rahat bud va documantation 33 safheyi dasht. hadaghal mishod ye chizi fahmid ama tu version e jadid ke documentesh fagat 7 safhast va hich tozihi nadade.

ADD REPLYlink written 2.3 years ago by Mohammad Ghoreishi50
1

darket mikonam ama momaresat hamishe javab mide...rasti hal kardi hads zadam ham zabunim?!

ADD REPLYlink modified 2.3 years ago • written 2.3 years ago by Fereshteh2.8k
1

omidvaram momaresatam javab bede. hanuz data ham dastam nareside amma daram ba datahaye digaran inkararo anjam midam. va chan ruze ke fagat allafe phasing hastam.

taajob kardam didam kesi be farsi neveshte. berlin zendeghi mikonid? chi mikhunid?!

ADD REPLYlink written 2.3 years ago by Mohammad Ghoreishi50
1

aalie ke qable amade shodane dadehat shoru kardi...genetics moleculi mikhunam...to ham bia Berlin khosh migzare!

ADD REPLYlink written 2.3 years ago by Fereshteh2.8k

che jaleb genetic e moleculi. ettefaghan tasmim daram vase doctora beram amrica ya australi, vali zaban e almani yad gereftan kheili sakhte.

please add goreishi@gmail.com to get more familiar with together.

ADD REPLYlink written 2.3 years ago by Mohammad Ghoreishi50
1

barat ba gmail ye email ferestadam!

ADD REPLYlink written 2.3 years ago by Fereshteh2.8k

pas hal kardi ke like kardi?!

ADD REPLYlink written 2.3 years ago by Fereshteh2.8k
1

are aval taajob kardam amma khoshhal shodam didam kesi payam e farsi gozashte.

ADD REPLYlink written 2.3 years ago by Mohammad Ghoreishi50
1

Please write in ENGLISH!!

ADD REPLYlink modified 2.3 years ago • written 2.3 years ago by Tafelplankje120

I a sorry Dear Tafelplankje. this was just a conversation between Sarah and I, and not related to my questions.

ADD REPLYlink written 2.3 years ago by Mohammad Ghoreishi50
1

So, please, if you do not care about it do it in another place e.g. private e-mails. We can then keep the goal from this environment that is share knowledge one each other in english! Your topic was quite interesting, however with an upsetting progress. Thanks a lot! Best, Juliana.

ADD REPLYlink written 2.3 years ago by Juliana30

Sorry again. you're right.

ADD REPLYlink written 2.3 years ago by Mohammad Ghoreishi50
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