Question: Venn Diagram for differentially expressed miRNAs
1
gravatar for adnanjaved1988
3.7 years ago by
Germany
adnanjaved198860 wrote:

Hey Everyone

                  I was wondering if somebody can help me with Venn Diagram in R. I have excel sheet in which I have group comparisons and their corresponding miRNAs which are either up-regulated or down. I want Venn Diagram representation for this information.

Thanks :)

 

 

 

Group Comparisons      Up-regulated miR Down-regulated miRNAs
A vs. B hsa-miR-29a-3p has-miR-221-3p  ,hsa-miR-29b-3p
A vs. C hsa-miR-27a-3p, hsa-miR-27b-3p hsa-miR-21-5p, hsa-miR-221-3p, hsa-miR-222-3p
A vs. D hsa-miR-21-5p, hsa-miR-17-5p, hsa-miR-20a,hsa-miR-20b,hsa-miR-29a-3p hsa-miR-214-3p
A vs. E hsa-miR-29a-3p,hsa-let-7f-5p, hsa-miR-20a-5p hsa-miR-29b-3p, hsa-let-7a-5p, hsa-let-7b-5p
B vs. C hsa-miR-27a-3p, hsa-miR-27b-3p, hsa-miR-29b-3p, hsa-let-7g-5p hsa-miR-21-5p,hsa-miR-221-3p, hsa-miR-222-3p
B vs. D hsa-miR-27a-3p, hsa-miR-27b-3p,hsa-miR-221-3p,hsa-let-7a-5p, hsa-let-7d-5p, and hsa-let-7e-5,hsa-let-7f-5p hsa-miR-24-3p
B vs. E hsa-miR-21-5p hsa-miR-24-3p
rna-seq next-gen R • 1.6k views
ADD COMMENTlink modified 3.7 years ago by Deepak Tanwar3.9k • written 3.7 years ago by adnanjaved198860
4
gravatar for Deepak Tanwar
3.7 years ago by
Deepak Tanwar3.9k
ETH Zürich, Switzerland
Deepak Tanwar3.9k wrote:

Please try to do a Google search, before posting a question!

You could refer to the following earlier Biostars posts:

How Can I Generate A Venn Diagram In R For A Given Csv File

How to generate a Venn diagram

How to create a Venn diagram using ortholog clusters?

Drawing venn diagram in R

ADD COMMENTlink written 3.7 years ago by Deepak Tanwar3.9k
1

+1 for doing a little homework before posting on Biostars.

That said, I don't think I saw a link to Vennerable amongst those Biostars posts, so you may also want to check out this tutorial:

http://matticklab.com/index.php?title=Weighted_Venn_diagrams_in_R

ADD REPLYlink written 3.7 years ago by Charles Warden6.6k
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