Question: Odds Ratio Confidence Intervals in SNP Test
gravatar for Vincent Laufer
5.3 years ago by
Vincent Laufer1.1k
United States
Vincent Laufer1.1k wrote:

Hello, I am using SNP Test to do association testing and generate relevant statistics. One of my SNPs appeared strongly associated, p=1.09*10-6; OR = 1.16, 95% CI 0.99 -1.35.

I was just wondering what is being used to calculate the OR CI since it crosses 1, but the p-value appears highly significant.

Can anyone explain this to me?


snptest confidence interval ci or • 2.4k views
ADD COMMENTlink written 5.3 years ago by Vincent Laufer1.1k

Which OR do you refer to? het_OR, hom_OR, or all_OR? Can you provide more information, like genotype counts for that SNP?

ADD REPLYlink written 5.3 years ago by Randel40
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