Compare multiple samples on KEGG

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8.7 years ago

zimmlerten ▴ 10

Hi all,

I have recently completed the annotation of two metagenomes. I have assembled them and extracted potential genes and their related protein sequences using Prokka. To further compare their functional potential, I analyzed them using the GhostKOALA service on the KEGG website.

Now, I would like to map them both together on KEGG pathways to be able to highlight the differences between them. Is there a way to combine the results of GhostKOALA mapping and to highlight the identified enzymes with different colors? Thanks for the advice

Michael Tangherlini

KEGG metagenome • 3.6k views

ADD COMMENT • link updated 18 months ago by Ram 43k • written 8.7 years ago by zimmlerten ▴ 10

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Check out the post below. Not sure if there's anything newer than pathview or not. I'd aso like to know if there is anything more current.

Comparison Of Pathways Between Microbial Genomes

ADD REPLY • link updated 4.4 years ago by Ram 43k • written 8.3 years ago by russianconcussion ▴ 30

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