I have recently completed the annotation of two metagenomes. I have assembled them and extracted potential genes and their related protein sequences using Prokka. To further compare their functional potential, I analyzed them using the GhostKOALA service on the KEGG website.
Now, I would like to map them both together on KEGG pathways to be able to highlight the differences between them. Is there a way to combine the results of GhostKOALA mapping and to highlight the identified enzymes with different colors?
Thanks for the advice