Question: Mapping Markers
0
gravatar for Sunil Kumar
7.3 years ago by
Sunil Kumar0 wrote:

I have designed more than 1000 primer pairs using EST resources and I know the exact location (chromosome co-ordinates) of each primer. I want to indicate / map these primers on respective chromosomes. how can i do it? since i know which chromosome it belongs to and its exact location i hope it can be done easily using any simple software tool. Plz help

coordinates • 1.1k views
ADD COMMENTlink written 7.3 years ago by Sunil Kumar0

You know the "exact location of each primer" and you want to "map these primers on their respective chromosome" ????

ADD REPLYlink written 7.3 years ago by Pierre Lindenbaum118k

Do you mean you know the exact location of the ESTs on the chromosome and you want to map the primers you've designed with the EST to the chromosome?

ADD REPLYlink written 7.3 years ago by Damian Kao15k
1
gravatar for Larry_Parnell
7.3 years ago by
Larry_Parnell16k
Boston, MA USA
Larry_Parnell16k wrote:

I agree with Pierre and DK that the question is a bit vague. If you're looking to visually map the primer pairs/ESTs to a genome, you can use the custom tracks option at the UCSC genome browser. In this manner, you can see your data alongside a lot of other available genome information.

ADD COMMENTlink written 7.3 years ago by Larry_Parnell16k
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