I have designed more than 1000 primer pairs using EST resources and I know the exact location (chromosome co-ordinates) of each primer. I want to indicate / map these primers on respective chromosomes. how can i do it? since i know which chromosome it belongs to and its exact location i hope it can be done easily using any simple software tool. Plz help
I agree with Pierre and DK that the question is a bit vague. If you're looking to visually map the primer pairs/ESTs to a genome, you can use the custom tracks option at the UCSC genome browser. In this manner, you can see your data alongside a lot of other available genome information.