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8.7 years ago
kunaphas.kon
•
0
I try to add mutsig tool in galaxy, but I don't know how to write output tag in mutsig.xml
(configuration file) since mutsig tool, the parameter output , you only put the prefix and the program will create four files including prefix name that we define it in parameter (example: run_MutSigCV.sh <path_to_MCR> mutations.maf coverage.txt covariates.txt output
, the outputs will have output.coverage.txt
, output.mutations.txt
, output.categs.txt
, and output.sig_genes.txt
)
https://www.broadinstitute.org/cancer/cga/mutsig_run
How can I handle this task?
I really appreciate any help you can provide
Note