Question: "Error: intron hint is too short" and "error in addgene "
0
gravatar for Mehmet
3.7 years ago by
Mehmet460
Japan
Mehmet460 wrote:

 

Dear All,

After I run Augustus gene prediction tool, I checked gene prediction output file and saw the error "Error: intron hint is too short", and I checked .gff file and saw " error in add gene " .  Do you have any idea why I got these errors and how to fix ?

Thanks

 

next-gen genome gene • 993 views
ADD COMMENTlink modified 3.7 years ago • written 3.7 years ago by Mehmet460
0
gravatar for Mehmet
3.7 years ago by
Mehmet460
Japan
Mehmet460 wrote:

OK. I have solved these two problems, and I am writing here in case someone else may have the same problems. I have used AUGUSTUS 2.5.5 version previously, then I have used AUGUSTUS 3.1 version and the problem has been solved.

ADD COMMENTlink written 3.7 years ago by Mehmet460

Dear Mehmet,

I'm using AUGUSTUS 3.2.3, I also get this information: "Error: intron hint is too short" but no "error in add gene". I figure maybe I can just ignore it, do you think that's OK?

       Sincerely,
                Kang
ADD REPLYlink written 23 months ago by dukecomeback40

Hi Kang,

You can ignore, and continue your work. This is OK.

ADD REPLYlink written 23 months ago by Mehmet460
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