I am new to the program ADMIXTURE.
I am running it from K=1 to K=20 on a set of 2033 individuals and 276,899 SNPs post-LD-pruning. The sample order is based on the default order in the dataset I downloaded, so population members are not necessarily back-to-back and related populations are not necessarily listed near each other.
Ideally, in the morning I will have a set of 40 *.Q files (20 with CV and bootstrap and 20 without), so in preparation I am trying to figure out how to graph them with the bars in a meaningful order. I was wondering if anyone had suggestions on how to this (or general suggestions about managing ADMIXTURE output).
I have the exact same question! Here is a similar one: Can't figure out order of output rows in ADMIXTURE