Hi I'm a young high school intern doing working with RNAseq this summer. These few weeks I've been looking at a specific gene in neuronal, iPS-differentiated cells and finding differentially expressed isoforms. I also looked at a specific SNP-affected exon in one isoform. Now that I finished that I have around 2 weeks to just explore with MISO, look at other interesting genes, etc.
I would like to do some genome wide analyses as well, like finding what percent of alternative splicing events are differentially expressed (I was planning on doing percent of genes differentially expressed, but that's not possible with MISO's exon-centric approach to filtering events). What are some other interesting things I can do with the data output I have? I was also provided with a huge list of genes that are differentially expressed between neuronal development stages with FDR and fold-change values, but I'm not sure what I can do with that.