Question: How to retrieve single Ka and Ks values from a whole multiple sequence alignment using PAML (codeml)?
0
gravatar for tigeradab
5.2 years ago by
tigeradab50
India
tigeradab50 wrote:

I am able to retrieve ka/ks ratio for a multiple sequence alignment using the model=0 and NSsites=0 in the .ctl file of PAML. But, I also require the individual ka and ks values for the whole alignment. Is it possible to retrieve this from PAML? If yes, then what parameter should I change in the .ctl file?

ADD COMMENTlink modified 5.1 years ago by Biostar ♦♦ 20 • written 5.2 years ago by tigeradab50
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2048 users visited in the last hour